PyOpenWorm
PyOpenWorm API
Basic Classes
Worm
Network
Connection
Cell
Neuron
Muscle
Channel
Evidence
For Users
Requirements for data storage in OpenWorm
Interface
Data modelling
Nervous system
Development
Aging
Information assurance
Reasoning and Data integrity
Input validation
Provenance
Access control
Miscellaneous
Versioning
Why RDF?
FuXi
Adding Data to
YOUR
OpenWorm Database
Making data objects
Sharing Data with other users
For Developers
Adding documentation
API Documentation
Substitutions
Conventions
RDF semantics for PyOpenWorm
RDF structure for PyOpenWorm
Population()
Population.filterCells(filters : ListOf(PairOf(unboundMethod, methodArgument))) : Population
NeuroML()
NeuroML.generate(object : {Network, Neuron, IonChannel}, type : {0,1,2}) : neuroml.NeuroMLDocument
NeuroML.write(document : neuroml.NeuroMLDocument, filename : String)
PyOpenWorm
Docs
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Overview: module code
Edit on GitHub
All modules for which code is available
PyOpenWorm.cell
PyOpenWorm.channel
PyOpenWorm.connection
PyOpenWorm.data
PyOpenWorm.dataObject
PyOpenWorm.evidence
PyOpenWorm.muscle
PyOpenWorm.network
PyOpenWorm.neuron
PyOpenWorm.worm